PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca53894.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family NAC
Protein Properties Length: 305aa    MW: 34755.2 Da    PI: 7.3212
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca53894.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.22.3e-55161411128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lppGfrFhPtdeel+++yL +k  ++++++  +i e+d++k+ePwdLpkk+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++  ++ 
  Dca53894.1  16 LPPGFRFHPTDEELITHYLSHKFLDSSFNA-IAIGEADLNKIEPWDLPKKAKWGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYR-AKTI 112
                 79*************************999.88***************99999*****************************************.8999 PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 vg+kktLvfy+grapkgek++Wvmheyrl
  Dca53894.1 113 VGMKKTLVFYTGRAPKGEKSNWVMHEYRL 141
                 ***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-629166IPR003441NAC domain
PROSITE profilePS5100556.84816166IPR003441NAC domain
PfamPF023651.7E-2917141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MENNSGMSME DEQMELPPGF RFHPTDEELI THYLSHKFLD SSFNAIAIGE ADLNKIEPWD  60
LPKKAKWGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIYRAK TIVGMKKTLV  120
FYTGRAPKGE KSNWVMHEYR LHGKFPNNYL PKNLKNEWVI SRVFKKNSNA KTPYDPRSIT  180
PKELHPSYLP PLMDSSPSYD GPQQTKVMCT TTNVDSCHAA SNPHIDEQYH YNSTITSHDM  240
ASSSSSLLYS MKSSIAELEF VDSILAQDQP LLSLLIEGKS SIKEEVGLNG SSGPNNNGFN  300
CLWSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B8e-551317114170NAC domain-containing protein 19
4dul_A8e-551317114170NAC domain-containing protein 19
1ut7_B8e-551317114170NO APICAL MERISTEM PROTEIN
1ut7_A8e-551317114170NO APICAL MERISTEM PROTEIN
1ut4_B8e-551317114170NO APICAL MERISTEM PROTEIN
1ut4_A8e-551317114170NO APICAL MERISTEM PROTEIN
3swp_D9e-551317117173NAC domain-containing protein 19
3swp_C9e-551317117173NAC domain-containing protein 19
3swp_B9e-551317117173NAC domain-containing protein 19
3swp_A9e-551317117173NAC domain-containing protein 19
3swm_D9e-551317117173NAC domain-containing protein 19
3swm_C9e-551317117173NAC domain-containing protein 19
3swm_B9e-551317117173NAC domain-containing protein 19
3swm_A9e-551317117173NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693263.11e-119PREDICTED: NAC domain-containing protein 100-like
SwissprotQ9FLJ22e-99NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A0J8BD421e-119A0A0J8BD42_BETVU; Uncharacterized protein
STRINGVIT_17s0000g06400.t011e-102(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.14e-99NAC domain containing protein 100